Package: projections 0.3.0
projections: Project Future Case Incidence
Provides functions and graphics for projecting daily incidence based on past incidence, and estimates of the serial interval and reproduction number. Projections are based on a branching process using a Poisson-distributed number of new cases per day, similar to the model used for estimating R0 in 'EpiEstim' or in 'earlyR', and described by Nouvellet et al. (2017) <doi:10.1016/j.epidem.2017.02.012>.
Authors:
projections_0.3.0.tar.gz
projections_0.3.0.zip(r-4.7)projections_0.3.0.zip(r-4.6)projections_0.3.0.zip(r-4.5)
projections_0.3.0.tgz(r-4.6-any)projections_0.3.0.tgz(r-4.5-any)
projections_0.3.0.tar.gz(r-4.7-any)projections_0.3.0.tar.gz(r-4.6-any)
projections_0.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
projections/json (API)
| # Install 'projections' in R: |
| install.packages('projections', repos = c('https://ncov-ic.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/reconhub/projections/issues
Pkgdown/docs site:https://www.repidemicsconsortium.org
Last updated from:a9e8abcd73 (on release). Checks:7 ERROR, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 116 | ||
| source / vignettes | OK | 155 | ||
| linux-release-x86_64 | ERROR | 125 | ||
| macos-release-arm64 | ERROR | 81 | ||
| macos-oldrel-arm64 | ERROR | 86 | ||
| windows-devel | ERROR | 62 | ||
| windows-release | ERROR | 81 | ||
| windows-oldrel | ERROR | 106 | ||
| wasm-release | OK | 108 |
Exports:add_projectionsbuild_projectionsget_datesproject
Dependencies:aweekclicpp11distcretefarverggplot2gluegtableincidenceisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Subsetting 'projections' objects | "subset.projections" "[.projections" subset.projections [.projections |
| Conversion of projections objects | as.data.frame.projections as.matrix.projections |
| Constructor for projections objects | build_projections |
| Compute cumulative projections | cumulate.projections |
| Access content projections objects | get_dates get_dates.default get_dates.projections |
| Plot projections objects | add_projections plot.projections |
| Print method for projections objects | print.projections |
| Project future incidence | project |
