Package: projections 0.3.0

Thibaut Jombart

projections: Project Future Case Incidence

Provides functions and graphics for projecting daily incidence based on past incidence, and estimates of the serial interval and reproduction number. Projections are based on a branching process using a Poisson-distributed number of new cases per day, similar to the model used for estimating R0 in 'EpiEstim' or in 'earlyR', and described by Nouvellet et al. (2017) <doi:10.1016/j.epidem.2017.02.012>.

Authors:Thibaut Jombart [aut, cre], Pierre Nouvellet [aut], Sangeeta Bhatia [ctb]

projections_0.3.0.tar.gz
projections_0.3.0.zip(r-4.7)projections_0.3.0.zip(r-4.6)projections_0.3.0.zip(r-4.5)
projections_0.3.0.tgz(r-4.6-any)projections_0.3.0.tgz(r-4.5-any)
projections_0.3.0.tar.gz(r-4.7-any)projections_0.3.0.tar.gz(r-4.6-any)
projections_0.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
projections/json (API)

# Install 'projections' in R:
install.packages('projections', repos = c('https://ncov-ic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/reconhub/projections/issues

Pkgdown/docs site:https://www.repidemicsconsortium.org

On CRAN:

Conda:

6.94 score 14 stars 1 packages 174 scripts 390 downloads 4 mentions 4 exports 20 dependencies

Last updated from:a9e8abcd73 (on release). Checks:7 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR116
source / vignettesOK155
linux-release-x86_64ERROR125
macos-release-arm64ERROR81
macos-oldrel-arm64ERROR86
windows-develERROR62
windows-releaseERROR81
windows-oldrelERROR106
wasm-releaseOK108

Exports:add_projectionsbuild_projectionsget_datesproject

Dependencies:aweekclicpp11distcretefarverggplot2gluegtableincidenceisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Subsetting 'projections' objects"subset.projections" "[.projections" subset.projections [.projections
Conversion of projections objectsas.data.frame.projections as.matrix.projections
Constructor for projections objectsbuild_projections
Compute cumulative projectionscumulate.projections
Access content projections objectsget_dates get_dates.default get_dates.projections
Plot projections objectsadd_projections plot.projections
Print method for projections objectsprint.projections
Project future incidenceproject