Package: odin.dust 0.3.13

Rich FitzJohn

odin.dust: Compile Odin to Dust

Less painful than it sounds, this package compiles an odin model to use dust, our new stochastic model system. Supports only a subset of odin models (discrete time stochastic models with no interpolation and no delays).

Authors:Rich FitzJohn [aut, cre], Alex Hill [aut], John Lees [aut], Imperial College of Science, Technology and Medicine [cph]

odin.dust_0.3.13.tar.gz
odin.dust_0.3.13.zip(r-4.7)odin.dust_0.3.13.zip(r-4.6)odin.dust_0.3.13.zip(r-4.5)
odin.dust_0.3.13.tgz(r-4.6-any)odin.dust_0.3.13.tgz(r-4.5-any)
odin.dust_0.3.13.tar.gz(r-4.7-any)odin.dust_0.3.13.tar.gz(r-4.6-any)
odin.dust_0.3.13.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
odin.dust/json (API)

# Install 'odin.dust' in R:
install.packages('odin.dust', repos = c('https://ncov-ic.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mrc-ide/odin.dust/issues

On CRAN:

Conda:

5.56 score 3 stars 174 scripts 1 mentions 4 exports 31 dependencies

Last updated from:bb34b58b78 (on master). Checks:7 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR439
source / vignettesOK243
linux-release-x86_64ERROR374
macos-release-arm64ERROR300
macos-oldrel-arm64ERROR287
windows-develERROR656
windows-releaseERROR685
windows-oldrelERROR614
wasm-releaseOK123

Exports:odin_dustodin_dust_odin_dust_optionsodin_dust_package

Dependencies:briocallrcinterpolateclicpp11decordescdeSolvedigestdustfsgluejsonlitelifecyclemagrittrodinotelpillarpkgbuildpkgconfigpkgloadprocessxpsR6ringrlangrprojroottibbleutf8vctrswithr

Porting from odin
Avoiding output() | Limited support for interpolate() | Delays are not supported | Not all distributions are supported | Interface differences

Last update: 2023-09-26
Started: 2022-08-04

SIR models
Stochastic SIR model definition | Implementing the SIR model using odin.dust | Saving a model into a package | Running the SIR model with dust | Adding age structure to the model

Last update: 2022-11-08
Started: 2020-10-26

Readme and manuals

Help Manual

Help pageTopics
Create a dust odin modelodin_dust odin_dust_
Options for odin_dustodin_dust_options
Update package codeodin_dust_package